www.plantsci.cam.ac.uk/phdstudentships/baulcombe.html -
[Cached Version]
Published on: 10/12/2008
Last Visited: 6/14/2008
David BaulcombeDepartment of Plant Sciences: PhD Studentships
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Professor David Baulcombe
Find out more about David Baulcombe and his group or email David Baulcombe,plantsci.cam.ac.uk
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The basic mechanisms of RNA silencing are now well understood (Baulcombe, 2004).
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Our papers on a RNA processing cofactors (Herr et al., 2006) and Argonaute (Baumberger and Baulcombe, 2005) illustrate the types of approach that can be taken.
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*Baulcombe, D. (2004) RNA silencing in plants.Nature, 431, 356-363. Baumberger, N. and Baulcombe, D.C. (2005) Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits micro RNAs and short interfering RNAs.Proceedings Of The National Academy Of Sciences Of The United States Of America, 102, 11928-11933. Baurle, I., Smith, L.M.A., Baulcombe, D. and Dean, C. (2007) Widespread role for the flowering time regulators FCA and FPA in siRNA-directed chromatin silencing.Science (in press) Dalmay, T., Hamilton, A.J., Rudd, S., Angell, S. and Baulcombe, D.C. (2000) An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus.Cell, 101, 543-553. Dalmay, T.D., Horsefield, R., Braunstein, T.H. and Baulcombe, D.C. (2001) SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis.EMBO Journal, 20, 2069-2078. Hernandez-Pinzon, I., Yelina, N.E., Schwach, F., Studholme, D.J., Baulcombe, D. and Dalmay, T. (2007) SDE5, the putative homologue of a human mRNA export factor, is required for transgene silencing and accumulation of trans-acting endogenous siRNA.The Plant Journal, 50, 140-148. *Herr, A.J., Jensen, M.B., Dalmay, T. and Baulcombe, D. (2005) RNA polymerase IV directs silencing of endogenous DNA.Science, 308, 118-120. Herr, A.J., Molnar, A., Jones, A. and Baulcombe, D.C. (2006) Defective RNA processing enhances RNA silencing and accelerates flowering in Arabidopsis.Proceedings Of The National Academy Of Sciences Of The United States Of America, 103, 14994-15001. *Molnar, A., Schwach, F., Studholme, D.J., Thuenemann, E. and Baulcombe, D. (2007) miRNAs control gene expression in single cell alga Chlamydomonas reinhardtii.Nature, 447, 1126-1129. Smith, L.M., Pontes, O., Searle, I., Yelina, N.E., Yousafzai, F.K., Herr, A.J., Pikaard, C. and Baulcombe, D. (2007) A novel SNF2 protein associated with nuclear RNA silencing and spread of a silencing signal between cells in Arabidopsis.Plant Cell, 19, doi: 10.1105/tpc.1107.051540
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*Baulcombe, D. (2004) RNA silencing in plants.Nature, 431, 356-363. Baulcombe, D. (2005) RNA silencing.Trends In Biochemical Sciences, 30, 290-293.
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RNA silencing is a recently discovered genetic mechanism in many eukaryotes (Baulcombe, 2004; Baulcombe, 2005).It involves double stranded RNA that is processed into short 21-24nt RNA molecules.These short interfering (si) RNAs are then recruited as the specificity determinant of an Argonaute nuclease.Argonaute proteins target RNA molecules with sequence complementarity to the bound siRNA (Baumberger and Baulcombe, 2005).
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*Baulcombe, D. (2004) RNA silencing in plants.Nature, 431, 356-363. Baulcombe, D. (2005) RNA silencing.Trends In Biochemical Sciences, 30, 290-293. *Herr, A.J., Jensen, M.B., Dalmay, T. and Baulcombe, D. (2005) RNA polymerase IV directs silencing of endogenous DNA.Science, 308, 118-120. *Jones, L., Ratcliff, F. and Baulcombe, D.C. (2001) RNA-directed transcriptional gene silencing in plants can be inherited independently of the RNA trigger and requires Met1 for maintenance.Current Biology, 11, 747-757. Nobuta, K., Venu, R.C., Lu, C., Belo, A., Vemaraju, K., Kulkarni, K., Wang, W., Pillay, M., Green, P.J., Wang, G.-L. and Meyers, B.C. (2007) An expression atlas of rice mRNAs and small RNAs Nature Biotechnology, 25, 473. Smith, L.M., Pontes, O., Searle, I., Yelina, N.E., Yousafzai, F.K., Herr, A.J., Pikaard, C. and Baulcombe, D. (2007) A novel SNF2 protein associated with nuclear RNA silencing and spread of a silencing signal between cells in Arabidopsis.Plant Cell, 19, doi: 10.1105/tpc.1107.051540
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However after random mutagenesis of Rx we could identify mutants of Rx that were able to confer resistance against the strains that overcame the wild type resistance (Farnham and Baulcombe, 2006).