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Dr. Richard A. Bonneau

Direct Phone: (206) ***-****       

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Institute for Systems Biology

401 Terry Avenue North

Seattle, Washington 98109

United States

Company Description

ISB was founded in 2000 by systems biologist Leroy Hood, immunologist Alan Aderem, and protein chemist Ruedi Aebersold. ISB was established on the belief that the conventional models for exploring and funding breakthrough science have not caught up with t ... more

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Background Information

Employment History

Group Leader: Systems Biology

Simons Foundation

Associate Professor


North Pole

making movie "santa buddies"


Graduate Student
University of Washington

Member of the Computer Science Faculty
Courant Institute of Mathematical Sciences


Department of Biology

New York University



University of Washington


New York University

Web References (111 Total References)

Richard ... [cached]

Richard Bonneau Affiliate Faculty (206) 732-1463

Peptide Atlas [cached]

Mark R. Flory (ISB), Hookeun Lee (ISB), Richard Bonneau (ISB), Parag Mallick (ISB), Kyle Serikawa (UW), David R. Morris (UW), & Ruedi Aebersold (ISB)

Mark R. Flory, Hookeun Lee, Richard Bonneau, Parag Mallick, Kyle Serikawa, David R. Morris, & Ruedi Aebersold, 2005, (submitted)

Institute for Systems Biology: Affiliate Faculty Groups [cached]

Rich Bonneau Computational Biology and Structural Biology

Institute for Systems Biology: Bonneau Group [cached]

Bonneau Group | Rich Bonneau Institute for Systems Biology: Bonneau Group

Rich Bonneau
Rich Bonneau
Dr. Bonneau is a faculty member at New York University's Center for Comparative Functional Genomics, where he is a joint member of both the Biology and Computer Science departments. His affiliate position with the Institute for Systems Biology offers many exciting possibilities for exchange of ideas between these two centers, both focused on applying functional genomics to a wide range of systems. His research efforts are focused on making computational tools, algorithms and methods for systems-wide elucidation of biological systems. His research aims to develop computational methods at the intersection of two interrelated fields: protein structure and functional genomics. Rich is also currently the technical lead on two grid computing collaborations with IBM -- the first and second phases of the Human Proteome Folding Project.
Dr. Bonneau did his doctoral work at the University of Washington in Seattle working with David Baker on the state of the art protein structure modeling and prediction platform, Rosetta.
Rich is currently a member of the Rosetta commons and continues to develop and work with Rosetta as part of several projects in the lab. Before joining NYU he worked as a Senior Scientist -- with Leroy Hood -- at the Institute for Systems Biology. Rich also oversees TACITUS's ( approach to data gaming for all applications that focus on genomics, computational biology and cell biology.
WCGrid Message Board Posts by Dr. Bonneau, Description of HPF Project. Results from the Human Proteome Folding Project can be found at the Public Data Repository associated with the Yeast Resource Center.
Iliana Avila-Campillo, Kevin Drew , John Lin, David J. Reiss, Richard Bonneau.
Madar, A., Bonneau, R. Learning global models of transcriptional regulatory networks from data. Chapter in Computational Systems Biology (2007). Humana Press, [In press]
Bonneau, R. (2007) De Novo Structure Prediction: methods and applications. Chapter 12 in Bioinformatics: From genomes to therapies. Bioinformatics- from Genomes to Therapies. (2007) Wiley-VCH. ISBN-10: 3-527-31278-1
Zhang, H., Loriaux, P., Eng, J., Bonneau, R., Smith, R & Aebersold, R. UniPep, a database for human N-linked glycosites: A resource for biomarker discovery. Genome Biology, [In Press]

There are currently two mirrors, ... [cached]

There are currently two mirrors, generously provided by Charlie Strauss of the Los Alamos National Laboratory and Richard Bonneau of the Institute for Systems Biology.

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